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RazorBack::Bioseqio_ Member List

This is the complete list of members for RazorBack::Bioseqio_, including all inherited members.

• ANNOTERR enum value
• ANYFORMAT enum value
• autodetect_type(const string &S) [protected, static]
• Bioseqio_() [inline, protected]
• Bioseqio_(const Bioseqio_ &B) [inline, protected]
• buffer() [inline, protected]
• buffer(size_t Idx) [inline, protected]
• Buffer [private]
• BUFFERSIZE [private, static]
• BuildCRCTable(unsigned int CRCTable[256]) [protected, static]
• clean_seq(string &S, int Type, bool Nocase, bool GapsOK=false) const [protected]
• compare_basecount(const string &S, const int Acgtx[5], bool Isdna) [protected, static]
• count_bases(const string &S, int Acgtx[5], bool Isdna) [protected, static]
• crc_32(const string &buffer) [protected, static]
• current_datestr() [protected, static]
• EMBL enum value
• error_str(Errtype_ Err) [static]
• Errtype_ enum name
• FASTA enum value
• fetch_buffer(istream &Inf) [protected]
• FILEERR enum value
• format_str(Formatflags_ F) [static]
• FORMATERR enum value
• Formatflags_ enum name
• GCG enum value
• gcg_checksum(const string &S) [protected, static]
• IDERR enum value
• make_buffer() [inline, protected]
• mol_weight(const string &S) [protected, static]
• OK enum value
• operator=(const Bioseqio_ &B) [inline, protected]
• parse_title(const char *Strc, string &Tok1, string &Rest) [private, static]
• PIR enum value
• read_embl(istream &Inf, string &Id, string &Annot, string &Seq, int &Embllen, int Acgtx[5]) [protected]
• read_fasta(istream &Inf, string &Id, string &Title, string &Seq) [protected]
• read_gcg(istream &Inf, string &Id, string &Annot, string &Seq, int &Gcglen, int &Gcgcheck, char &Typechar) [protected]
• read_pir(istream &Inf, string &Id, string &Title, string &Annot, string &Seq) [protected]
• read_swiss(istream &Inf, string &Id, string &Annot, string &Seq, int &Swlen, int &Mw, unsigned int &Crc32) [protected]
• SEQERR enum value
• SWISS enum value
• swissembl_comment(ostream &Outf, const string &S) [private, static]
• TITLEERR enum value
• TYPEERR enum value
• UNKNOWN enum value
• write_embl(ostream &Outf, const string &ID, const string &Title, const string &Annot, const string &Seq, Monomer_::Type_ Type) [protected, static]
• write_fasta(ostream &Outf, const string &ID, const string &Title, const string &Seq) [protected, static]
• write_gcg(ostream &Outf, const string &ID, const string &Title, const string &Annot, const string &Seq, Monomer_::Type_ Type) [protected, static]
• write_pir(ostream &Outf, const string &ID, const string &Title, const string &Annot, const string &Seq) [protected, static]
• write_swiss(ostream &Outf, const string &ID, const string &Title, const string &Annot, const string &Seq) [protected, static]
• ~Bioseqio_() [inline, protected, virtual]

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